
DATABASES AND DATASETS
Publicly available databases and datasets
DOQCS (Database of Quantitative Cellular Signaling) is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions.
Regulatory Networks Represented as Directed Graphs
Description |
Sig flat file format |
Dataset version used in the paper (Ma'ayan et al. published in Science Aug. 12 2005) for the analysis and visualization of CA1 neuron cellular network. The dataset is dated 9.22.2004 |
9.22.2004.txt |
The current updated version of the CA1 neuron cellular network dated 6.1.2006 |
6.1.2006.txt |
Ma'ayan A, Jenkins SL, Neves S, Hasseldine A, Grace E, Dubin-Thaler B, Eungdamrong NJ, Weng G, Ram PT, Rice JJ, Kershenbaum A, Stolovitzky GA, Blitzer RD, Iyengar R. Formation of regulatory patterns during signal propagation in a Mammalian cellular network. Science 2005 Aug; 309(5737): 1078-1083. |
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